Projects

Research IT collaborates with researchers on many types of projects, such as HPC processing and analysis, presenting bioinformatics tools in an easy to use web interface, or helping with data visualization.

The list below represents some of the projects we've helped with.

RPIMotif: Dobbs Laboratory | Create Datasets and Motif Submission

Create RPIMotif submissions.
Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing

Research paper acknowledging assistance from ResearchIT.
Molecular determinants of cadherin ideal bond formation: Conformation-dependent unbinding on a multidimensional landscape | PNAS

Research paper acknowledging assistance from ResearchIT.
Moss Lab - RNA2DMut

RNA2DMut will generate all possible point mutations of an input sequence and predicts structural information based on the Boltzmann 2D structural ensemble. RNA2DMut_Evaluate will calculate the same data, but for a set of user defined mutants.

http://rnajournal.cshlp.org/content/early/2017/11/28/rna.063933.117.short
RNAStructuromeDB

The RNAStructuromeDB is a repository of RNA folding metrics describing the ability of the human reference genome (hg38/GRCh38) to generate structured RNAs.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5722888/
SeriolaDB: Seriola Genomic Resource Website

Website for Seriola Genomic Resource.
TouchTerrain: Easily Create 3D-Printable Terrain Models

TouchTerrain: A simple web-tool for creating 3D-printable topographic models.

https://doi.org/10.1016/j.cageo.2017.07.005